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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | OMO53458 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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| Family | MYB | ||||||||
| Protein Properties | Length: 303aa MW: 34344.1 Da PI: 6.7861 | ||||||||
| Description | MYB family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 59.2 | 8.8e-19 | 23 | 70 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg+WT eEd +l+++++ +G g+W++ ar+ g++Rt+k+c++rw++yl
OMO53458 23 RGPWTVEEDFKLINYIATHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 70
89********************************************97 PP
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| 2 | Myb_DNA-binding | 51.4 | 2.5e-16 | 76 | 119 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
OMO53458 76 RGNITLEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 119
7999******************.*********.***********96 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 303 aa Download sequence |
MDVKGRNCGG NVQISEEEMD LRRGPWTVEE DFKLINYIAT HGEGRWNSLA RCAGLKRTGK 60 SCRLRWLNYL RPDVRRGNIT LEEQLLILEL HSRWGNRWSK IAQHLPGRTD NEIKNYWRTR 120 VQKHAKQLKC DVNSKQFKDT MRYLWMPRLV ERIQAAAAAT ATSTTTSASV TTPTANLGTG 180 QMVLPPLGNN DFGTSSSNYT PENSSTAASS DSFGTQVSPV SDLTTDYYSN IPVNNNPNPD 240 NYFQVGYSDS LISPAANYYN NHGMDFQSMD QHNNPWLDGA EAADNFLNAD DYFFLQQQFN 300 FNM |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT5G49620.1 | 7e-92 | MYB family protein | ||||
| Link Out ? help Back to Top | |
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| Ensembl | OMO53458 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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