PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO53517
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family C3H
Protein Properties Length: 112aa    MW: 12748.7 Da    PI: 8.9346
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO53517genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.71.1e-092854127
              --S---SGGGGTS--TTTTT-SS-SSS CS
   zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
              +ktelC + + +G C +G rCkFaHg+
  OMO53517 28 PKTELCTNCQTSGRCAFGKRCKFAHGR 54
              7************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 112 aa     Download sequence    
MPLYISKPVD ASVEMEDLMT VAYTQGTPKT ELCTNCQTSG RCAFGKRCKF AHGRERLRLV  60
IHNNRYKSRL GISYDILSEI VDIGEIYQLS ILSFSSPFAG LQHRFNPNKM GW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.11e-11C3H family protein