PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO53537
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family GRAS
Protein Properties Length: 232aa    MW: 25224.9 Da    PI: 8.4101
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO53537genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS97.81.6e-30582224163
      GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn.sseelaalkl..fsevs...Pilkfshlt 97 
               lLl+ A+ vss++   a+++L+    l+s++g+++qR+++yf +AL+a++ +  ++++++  +++  + +n + +e+ + +   +  ++   P++++++++
  OMO53537  58 LLLASADKVSSRQYDHARKFLNLCDFLSSNAGTSIQRVVHYFSKALRAKIDGePGETTSNGRESRVGQVSNgHPDETIVSQSpaLISCTlklPFIQVTQFA 158
               899************************************************96667777666666555555644444444444655543444********* PP

      GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetge 163
                 qaI e v++++r+HiiD+ i  G+Q ++L+qaLa+R+e p   l+iT+vg    +sk+++e+tg+
  OMO53537 159 GLQAITEHVASAKRIHIIDLAIRSGAQCISLMQALATREECPVeLLKITAVGT---TSKKKIEQTGD 222
               ***************************************7665499*******...57888888887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    
MASAHEASAV RLIKIAKASF NKVASLEWFD LSVLNKFFDC SSFSLSGDEI KDVELALLLL  60
ASADKVSSRQ YDHARKFLNL CDFLSSNAGT SIQRVVHYFS KALRAKIDGE PGETTSNGRE  120
SRVGQVSNGH PDETIVSQSP ALISCTLKLP FIQVTQFAGL QAITEHVASA KRIHIIDLAI  180
RSGAQCISLM QALATREECP VELLKITAVG TTSKKKIEQT GDQKHCCCRG RG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46600.24e-12GRAS family protein