PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO53576
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family GATA
Protein Properties Length: 154aa    MW: 16757.8 Da    PI: 10.4826
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO53576genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.68.3e-193973135
      GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
              C+ Cgt+kTplWR gp g+k+LCnaCG++ rkk++
  OMO53576 39 CADCGTSKTPLWRGGPAGPKSLCNACGIRSRKKRR 73
              ********************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    
MLDPNEKGSD SEEQSKNREA VSPKEAQNQS FSNEPKKTCA DCGTSKTPLW RGGPAGPKSL  60
CNACGIRSRK KRRAILGLNK GEDKKSTKRG GSNNSSSSNA KNSNLGDNLK QRLLSLGREV  120
LMQRSTVEKQ RRKLGEEEQA AVLLMALSYG SVYA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.12e-55GATA family protein