PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO53603
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ERF
Protein Properties Length: 262aa    MW: 29358.8 Da    PI: 5.7966
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO53603genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.97.7e-2186135255
       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                y+G+r+++ +g+W+AeIrdp     +  r++lg++ taeeAa+a+++a+k+++g
  OMO53603  86 VYRGIRQRP-WGKWAAEIRDPH----KgVRVWLGTYNTAEEAARAYDEAAKRIRG 135
               69*******.**********72....35************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    
MCGGAIISDF IAVKQSRNLT AEDLWSELDT FSDLLGLNYN GKDDSFDNKV GPNAKQPKKV  60
TSERAQKTSR GAEKEIIKAQ RTRKNVYRGI RQRPWGKWAA EIRDPHKGVR VWLGTYNTAE  120
EAARAYDEAA KRIRGDKAKL NFPAETAVVP PPMIQPPPAK RRCISPELSQ ASFETTDSSS  180
SPPQQPPYMG GFGYESEVYR PSKVVESELE LKEQISSLES FLGLEHEAET SEVSGSGETD  240
SVDLWMLDDL VTHHQQQRQL IY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.13e-50ERF family protein