PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO53681

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

NF-YB

Protein Properties

Length: 164aa MW: 18288.2 Da PI: 5.9994

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO53681	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	172.3	5.3e-54	16	111	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 +eqdr+lPianv+rimk++lP nakisk+aket+qecvsefisfvtseas+kc++e+rkt+ngdd++walatlGf+dy+ pl+ yl+kyreleg+k OMO53681 16 KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTSEASEKCRKERRKTVNGDDICWALATLGFDDYAVPLRRYLHKYRELEGDK 111 89********************************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence
MAENVGASSS NDDGIKEQDR LLPIANVGRI MKQILPPNAK ISKEAKETMQ ECVSEFISFV 60 TSEASEKCRK ERRKTVNGDD ICWALATLGF DDYAVPLRRY LHKYRELEGD KAANQDKVSN 120 SNQDKEEDQP SSSYGRNNQT RNQGLGPSPL KFSNNNSNLG GPYN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47810.1	8e-60	NF-YB family protein

Link Out ? help Back to Top
Ensembl	OMO53681