PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO53718
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family bHLH
Protein Properties Length: 210aa    MW: 23657.2 Da    PI: 9.3546
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO53718genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.99.8e-1054100755
               HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
       HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
               + Er RR ++ + ++ L+++lP++  +  +K +  +iL +++ YI+sL+
  OMO53718  54 KKERDRRGKMAQNYDLLQSMLPTL--TLLPKANREMILAETTTYIQSLE 100
               57*********************7..599******************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    
MADYSDKLIP PWSQFSPLET AAAAIVDEIE KGSSCRRPKE ANTKKNLIVT ESMKKERDRR  60
GKMAQNYDLL QSMLPTLTLL PKANREMILA ETTTYIQSLE EEIKRLEELK KNSSSDQAKL  120
LKGKIHLFDS DRNSSINVTV SSNVAFFGIQ SVNRPRLVTD IFMVFDYHKA EVLAANVAVN  180
QKQLTLTLTA VVNGNGENTI EKIKRDILNL