PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO53822

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

MYB

Protein Properties

Length: 276aa MW: 32165.2 Da PI: 9.2983

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO53822	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	61.1	2.3e-19	23	70	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll+++v+++G g+W+++ar g++R +k+c++rw +yl OMO53822 23 KGPWTAEEDRLLIEYVRLHGEGRWNSVARLAGLKRNGKSCRLRWVNYL 70 79********************************************97 PP
2	Myb_DNA-binding	51.7	2e-16	76	120	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++ OMO53822 76 RGQITPHEESIILELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 120 7888****************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence
MSWAVMGMAG HLGWGIIDEG WRKGPWTAEE DRLLIEYVRL HGEGRWNSVA RLAGLKRNGK 60 SCRLRWVNYL RPDLKRGQIT PHEESIILEL HARWGNRWST IARSLPGRTD NEIKNYWRTH 120 FKKKAKLSPE NNSDKAKARL LKRQQFQQQQ LLQQQQELQK QQQQQEQQQQ QLQLNQFDMK 180 KIMSLLDEHE HRAPPYVPQL RQEMATTSNS YPNTTEEQGF YYPPMINNSN VSTGSTDSSN 240 EEILWDGLWN LDDYGNFGSA CATSKASLHN LVTPFC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24310.1	2e-88	MYB family protein

Link Out ? help Back to Top
Ensembl	OMO53822