PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO53862
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family WRKY
Protein Properties Length: 252aa    MW: 28784.9 Da    PI: 8.5416
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO53862genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY70.81.9e-22103163259
               --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
               dDgy+WrKYGqK++ +++++r+Y+rCt++   gC+++k+v++ ++dp    ++Y g+H+++
  OMO53862 103 DDGYAWRKYGQKTILNANHSRNYFRCTHKndqGCQATKQVQQIEDDPPKYRTIYYGHHTCK 163
               8***************************99999**************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    
MSWDKKRAIE ELAKGKDLTN QLRDLLNGSN YLVGSEDLVM KIFNSFSNTL SILRNSSSGD  60
YDEVSQLNPR NNNSYDGRKD RRGCYKRRKC GDSWTRDTLT LFDDGYAWRK YGQKTILNAN  120
HSRNYFRCTH KNDQGCQATK QVQQIEDDPP KYRTIYYGHH TCKTLLKASQ LILDSTTSND  180
SSILLSFTNN TKQDDPFFSC FPSPVKQETK ESDLQQPASD ITCNRSSSSS SDYLLSSPHN  240
VRLISSNHNV VC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.12e-38WRKY family protein