PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO53982
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family bHLH
Protein Properties Length: 253aa    MW: 27748.8 Da    PI: 5.4946
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO53982genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH437.9e-14189234655
               HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
       HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
               +++Er RR ri +++ +L+el+P+     +k  + a++Le+AveY+k+Lq
  OMO53982 189 SIAERVRRTRISDRIRKLQELVPNM----DKQTNTADMLEEAVEYVKYLQ 234
               689*********************7....688*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    
MQPTPGGSSS SSGGGGGGGE VSRSGLARFR SAPATWLEAL FEEGEEDLLK PNQCLTQLLT  60
SSSTATRFPN SADPTGLFDE PPTGFQRQNS SPADFLANTS AAASDAYFSN FGIPPNYDYL  120
SPSIDVSPSS KRNREPDSQF TPTKFQSQLK GEQSGGVSNL IDVDMEKLLE DSVPCRVRAK  180
RGCATHPRSI AERVRRTRIS DRIRKLQELV PNMDKQTNTA DMLEEAVEYV KYLQSQIQEL  240
TELQRKCKCK TKE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.11e-84bHLH family protein