PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO54038
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ERF
Protein Properties Length: 256aa    MW: 28286.9 Da    PI: 4.6353
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO54038genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.2e-1877125355
       AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
               y+GVr ++ +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  OMO54038  77 YRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALSIKG 125
               9****998.**********843...6**********************99876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    
MTEPNHSSTS ETESCSSNNN SNSSTSSSSS SSSSYSQVHR QKLSRKCNNV DEIPETEENR  60
AKRPRESNSN SSKHIVYRGV RMRSWGKWVS EIREPRKKSR IWLGTFPTPE MAARAHDVAA  120
LSIKGDSAIL NFPELADLLP RPVSLMPRDI QAAAAKAASM VNFNPLPSSS SSSSLVSESC  180
SLSESNASEE PEEQLSEIVQ LPNIEGNFDS LFDSPNEFIL LDGWGFPPQD FYGGFSDQLW  240
NTENSIPGNF ETSVWE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.16e-55ERF family protein