PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO54067
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family HD-ZIP
Protein Properties Length: 760aa    MW: 84001 Da    PI: 6.1108
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO54067genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.22.2e-21105160156
               TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
  Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
               r+k +++t+eq++e+e+lF+++++p++++r++L+k+lgL  rqVk+WFqNrR++ k
  OMO54067 105 RKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 160
               7999************************************************9877 PP
2START2352e-732754982206
               HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT CS
     START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg 88 
               + ++a++el k+a+a++p+Wv+s+    e++n+de+++ f+ +++      +s+ea+r++gvv+ +l++lv++++d++ qW+e+++    ka+t++vi++g
  OMO54067 275 IVNQAMEELKKMATAGDPLWVRSVetgrEILNYDEYVKAFSVENSsngrpkRSIEASRDTGVVFVDLPRLVQSFMDVN-QWKEMFPclisKAATVDVICNG 374
               56789***********************************8888899*******************************.********************** PP

               ......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHH CS
     START  89 ......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllr 182
                     ga+qlm+aelq+l+plvp R+++fvRy++ql+a++w+ivdvS+d  +++  ++s+v+++++pSg++ie+ksngh+kvtwveh +++++++h ++r
  OMO54067 375 egpnkdGAVQLMFAELQMLTPLVPtREVYFVRYCKQLSAEQWAIVDVSIDKVEENI-DASLVKCRKRPSGCIIEDKSNGHCKVTWVEHLECQKSTVHTMYR 474
               ******************************************************98.9******************************************* PP

               HHHHHHHHHHHHHHHHHTXXXXXX CS
     START 183 slvksglaegaktwvatlqrqcek 206
                +++sgla+ga++w++tlq qce+
  OMO54067 475 TVISSGLAFGARHWMSTLQLQCER 498
               **********************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 760 aa     Download sequence    
MGFFDMSNPP TKDFFASPAL SLSLAGIFRD AGAAAAAAAA ASMEVEEGDE GSGGGGEGGS  60
SKREETVEIS SENSGPARSR SEDELLLEHD DDEDDHGDKS KKKKRKKYHR HTAEQIREME  120
ALFKESPHPD EKQRQQLSKQ LGLAPRQVKF WFQNRRTQIK AIQERHENSL LKQELDKLRE  180
ENKAMRETIN KSCCPNCGTT TTSKDGSMTT EEQQLRIENA KLKAEVEKLR TAIGKYPPGA  240
ASTSSCSAGN DQENRSSLDF YTGIFGLEKS RIMEIVNQAM EELKKMATAG DPLWVRSVET  300
GREILNYDEY VKAFSVENSS NGRPKRSIEA SRDTGVVFVD LPRLVQSFMD VNQWKEMFPC  360
LISKAATVDV ICNGEGPNKD GAVQLMFAEL QMLTPLVPTR EVYFVRYCKQ LSAEQWAIVD  420
VSIDKVEENI DASLVKCRKR PSGCIIEDKS NGHCKVTWVE HLECQKSTVH TMYRTVISSG  480
LAFGARHWMS TLQLQCERLV FFMATNVPTK DSTGVATLAG RKSILKLAQR MTWSFCHAIG  540
ASSYHTWNKV PSKTGEDIRV SSRKNLNDPG EPLGVIVCAV SSVWLPVTPN VLFDFLRDEA  600
RRSEWDIMSN GGPVQSIANL AKGQDRGNAV TIHAMKSKEN SMWVLQDSCT NAFESTVVFA  660
PVDITGMQSV ITGCDSSNMA ILPSGFSILP DGLESRPLVI TSRQEKSNDT EGGSLLTIAF  720
QILTNSSPTA KLTMESVESV NTLISCTLRN IKTSLQCEDG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101106KKKKRK
2101107KKKKRKK
3103107KKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein