PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO54273

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

CPP

Protein Properties

Length: 333aa MW: 37238.2 Da PI: 8.7909

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO54273	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	48.7	1.5e-15	109	147	3	41
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 +k+CnCk+skClk+YCeCfaag +C ++C Ce+C Nk e OMO54273 109 CKRCNCKRSKCLKLYCECFAAGIYCVDSCACENCYNKPE 147 89**********************************976 PP
2	TCR	41.4	2.8e-13	194	233	1	40
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+gC+Ck+skClkkYCeC+ a++ Cs+ C+Ce C N OMO54273 194 RHKRGCKCKRSKCLKKYCECYRAKVGCSDGCRCECCDNYF 233 589***********************************75 PP

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence
MDSPKSDGNA AEPSFPVSSL PAQSSRTSRY TPRLSESSFP ATPPVFGSPG LDLQQGTRFL 60 KRKHLSVDKV FVEIFNLRLL STKKAMRVLT VKLLQTLKRE TYIDESEGCK RCNCKRSKCL 120 KLYCECFAAG IYCVDSCACE NCYNKPEYED TVSDVREQIE SRNPLAFAPT VVNQANTSPN 180 VADDQNWISP SSARHKRGCK CKRSKCLKKY CECYRAKVGC SDGCRCECCD NYFGKKSAYD 240 MKGYGSSNKL KDNSNPINTL KAHSPKQKRI SPPQHQSDRS DSRSKPGLQS GPKFILQAVA 300 SSPPLTPYCN TEDRMNQMEI DSQGSSHDFK CQE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22780.1	4e-57	CPP family protein

Link Out ? help Back to Top
Ensembl	OMO54273