PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO54391

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

FAR1

Protein Properties

Length: 662aa MW: 76264.5 Da PI: 6.0896

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO54391	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	71.6	1.8e-22	60	142	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fYn YAke GF vr+s++ ++ +++e ++ ++ Cs g++++++ + r+r+etrtgC a++k +++++++w+++++eleHnH ++ OMO54391 60 FYNCYAKEQGFGVRVSNTWYR-KSKERYRGKLSCSSAGFKKKSEAN-----RPRPETRTGCPAMVKFRLMENKRWRIIEVELEHNHLIS 142 9*************99997.66779**********99888.....*********************************876 PP

Sequence ? help Back to Top
Protein Sequence Length: 662 aa Download sequence
MDEVSLNTDP VGDDDADGFE IEGDCGMSEC IGQNGVIQGE NPLPPAVGME FESYEDVYYF 60 YNCYAKEQGF GVRVSNTWYR KSKERYRGKL SCSSAGFKKK SEANRPRPET RTGCPAMVKF 120 RLMENKRWRI IEVELEHNHL ISPASGKFYK SHKHLGIGTK RALQLDAPEE VQKVRLFRTV 180 IVDVEGNGTA EVSNGEFQNS DNQCNQLRLK EGDAQAIHNY FSHMQLVDPN FFYVVDLNEK 240 GCLRNLFWTD ARSRVAYGYF GDVVAIDTTC LTDKYEVPLV SFVGVNHHGQ SVLLGCGLLA 300 GETIESYAWL FRAWLTCMLG RPPQAIITDQ CRNLQAAVVD VFPRASHCLC LSRIMQKVPE 360 KLGGLYEYEA IRLALNSAVY YSLRPEEFEA AWEDMVHHHG IRDHIWLQTL YEDRKRWVPV 420 YLKEIFLAGM FPTQPNEVVG SFFDGYLDRH TSLKEFLDKY DQALQANHQL EALADIDSRN 480 AGFMLNSRCY FELQLAKLYT NDILRKFERE VEGMYSCFST RQINIEGHII TYMVREQIEV 540 EGNRETRDFE VFYNATEMEV LCICGLFNFR GYLCRHALSV LHQNGMEEIP PQYILSRWRK 600 DIKRSHVLNH SSGGIDINNP VHRYDHLYKC IMQVVEEGRK SQDHFKDTVQ ALDEILSKLH 660 VS

Sequence ? help Back to Top

Protein Sequence Length: 662 aa Download sequence

MDEVSLNTDP VGDDDADGFE IEGDCGMSEC IGQNGVIQGE NPLPPAVGME FESYEDVYYF  60
YNCYAKEQGF GVRVSNTWYR KSKERYRGKL SCSSAGFKKK SEANRPRPET RTGCPAMVKF  120
RLMENKRWRI IEVELEHNHL ISPASGKFYK SHKHLGIGTK RALQLDAPEE VQKVRLFRTV  180
IVDVEGNGTA EVSNGEFQNS DNQCNQLRLK EGDAQAIHNY FSHMQLVDPN FFYVVDLNEK  240
GCLRNLFWTD ARSRVAYGYF GDVVAIDTTC LTDKYEVPLV SFVGVNHHGQ SVLLGCGLLA  300
GETIESYAWL FRAWLTCMLG RPPQAIITDQ CRNLQAAVVD VFPRASHCLC LSRIMQKVPE  360
KLGGLYEYEA IRLALNSAVY YSLRPEEFEA AWEDMVHHHG IRDHIWLQTL YEDRKRWVPV  420
YLKEIFLAGM FPTQPNEVVG SFFDGYLDRH TSLKEFLDKY DQALQANHQL EALADIDSRN  480
AGFMLNSRCY FELQLAKLYT NDILRKFERE VEGMYSCFST RQINIEGHII TYMVREQIEV  540
EGNRETRDFE VFYNATEMEV LCICGLFNFR GYLCRHALSV LHQNGMEEIP PQYILSRWRK  600
DIKRSHVLNH SSGGIDINNP VHRYDHLYKC IMQVVEEGRK SQDHFKDTVQ ALDEILSKLH  660
VS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1 family protein

Link Out ? help Back to Top
Ensembl	OMO54391