PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO54624

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

bHLH

Protein Properties

Length: 237aa MW: 26751.4 Da PI: 8.4821

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO54624	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.8	3e-11	72	101	3	31
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C. CS HLH 3 rahnerErrRRdriNsafeeLrellPk.as 31 ++h+e+E+rRR+riNs +++Lr+llP as OMO54624 72 KNHKEAEKRRRERINSHLNRLRTLLPYkAS 101 58************************9665 PP

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence
MQPADHNSEL YRFLAQNGVV GSSLGFPAAS TSSDTFPSMQ TFSSSSTYYP LEMSGVTTTE 60 TTPHDRALAA LKNHKEAEKR RRERINSHLN RLRTLLPYKA SLLAKVVQRV KELKQQTLEI 120 TELETFPSET DEITVLSCDY STTDGRLIFK ASLCCEDRSD LLPELMEILN SLHLKTLRAE 180 MSTLGGRIRN VLIVAADKDH SIESVHFLQN ALKSLLERSN SSDRSKRRRV LDHKLMV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	226	230	KRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41130.1	1e-79	bHLH family protein

Link Out ? help Back to Top
Ensembl	OMO54624