PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO54753

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

bHLH

Protein Properties

Length: 244aa MW: 28243.4 Da PI: 9.7322

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO54753	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	20.2	1.1e-06	89	134	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h ++Er RR++ +++++ L lP +K++K +i++ A++ +++L OMO54753 89 KHMMNERVRREKQKQSYFALHAKLPRG-----TKNDKNSIVQTATRRVQEL 134 5899*********************97.....7999999999999988877 PP

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence
MDQFIKQLLQ GEILWYQTPP PPVSQTAFLP YSNIPRIEFG QQSAAATGCN GGMMMTSGNM 60 NKKMIEFLMK SWSKPNTETR NSERERSFKH MMNERVRREK QKQSYFALHA KLPRGTKNDK 120 NSIVQTATRR VQELEWLKKD LENRNYELQA SLGAMNYEEK NDHEGTKITV KIDNPMSGID 180 SMLEVLKCLK TMDLNPRMIQ SKFTTQEFLA VMDIGTQIGA AEVEKVVNIT VQEAERKLQE 240 RWSR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43650.1	7e-39	bHLH family protein

Link Out ? help Back to Top
Ensembl	OMO54753