PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO54836
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family bHLH
Protein Properties Length: 219aa    MW: 24722.8 Da    PI: 5.4634
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO54836genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.21.4e-0868115454
               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
       HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
               ++  rEr RR+++N++f  L ++l +    +  + +K +iL  +++ + +L
  OMO54836  68 TKACRERLRREKLNERFLDLSSVLEPG---RPARTDKLAILDDTIRVLTQL 115
               6789**********************8...789*************99998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    
MDSLEDWDFL DYSFIDQNNS SDLLLSNYSG GGEIEFSSGN AVHQEKESVD GECSRKRARS  60
GSCGRPGTKA CRERLRREKL NERFLDLSSV LEPGRPARTD KLAILDDTIR VLTQLRTEAQ  120
ELNETKEKLL EEIKTLKAEK NELREEKLVL KGDKEKIEQQ LKTMTIPSAG YLPAHPAAYH  180
PGANKMAVFP GYSLVPMWQY LSPSVRDTSQ DHELRPPAA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14410.14e-64bHLH family protein