PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO54838
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ERF
Protein Properties Length: 135aa    MW: 14996.5 Da    PI: 8.8041
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO54838genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.21.3e-201668156
       AP2  1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56
              ++y+GVr+++ +g+++AeIrd    + + +r++lg+f taeeAa+a+++a+ +++g+
  OMO54838 16 TRYRGVRRRP-WGKFAAEIRDS---NrQGARVWLGTFNTAEEAARAYDRAAYAMRGH 68
              68********.**********4...3345**************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    
MEGGSKGNKE EGGGETRYRG VRRRPWGKFA AEIRDSNRQG ARVWLGTFNT AEEAARAYDR  60
AAYAMRGHLA ILNFPHEYPM GSGGGRATNY NMGSSSSSSS NSSTSSAKQV FEIEYYDDAL  120
LEELLMHEEN KSRKM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43410.11e-26ERF family protein