PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO54839
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ERF
Protein Properties Length: 140aa    MW: 15845.4 Da    PI: 5.3787
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO54839genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.33e-212172256
       AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56
              +y+GVr+++ +g+++AeIrdps    r   r +lg+f+taeeAa+a+++a+ +l+g+
  OMO54839 21 HYRGVRRRP-WGKYAAEIRDPS----RpgSRLWLGTFDTAEEAARAYDRAAFNLRGH 72
              7********.**********96....355**************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    
MEDPNKRKEG SKEEKGRDEV HYRGVRRRPW GKYAAEIRDP SRPGSRLWLG TFDTAEEAAR  60
AYDRAAFNLR GHMAILNFPN EYFSNQLMGS SSSGMSNPSG SSSNSSSAAA GSQEKQVFEF  120
EYLDDKVLEE LLETEEEKKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.11e-27ERF family protein