PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO54840
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ERF
Protein Properties Length: 221aa    MW: 25086 Da    PI: 5.234
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO54840genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.91.1e-1789138355
       AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
               y+GVr+++ +g+++AeIrd +    +  r++lg+f++ae Aa a+++a+ +++g
  OMO54840  89 YRGVRRRP-WGKFAAEIRDSTR---HgIRVWLGTFDSAEAAAMAYDQAAFSMRG 138
               9*******.**********422...25*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    
MDSFLFHSPN SNSSSESSFG SPPPPEFFPF NNNYLPFNEN DSEEMLLYGL LAAAAPTQET  60
SETTYPNQIK EEEVSSSMEK ESPKKERAYR GVRRRPWGKF AAEIRDSTRH GIRVWLGTFD  120
SAEAAAMAYD QAAFSMRGSA AVLNFPVERV QESLREMKCN QEEEGCSPVV ALKRKHSMRR  180
KMVSRSKKER DVRINNVVVL EDLGADYLEE LLTSSETARP W
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.19e-62ERF family protein