PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO54944

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

C2H2

Protein Properties

Length: 439aa MW: 49400.8 Da PI: 8.9277

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO54944	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.6	5.1e-06	57	79	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H OMO54944 57 YVCEICNQGFQRDQNLQMHRRRH 79 9*********************9 PP
2	zf-C2H2	16.1	3.2e-05	134	156	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k + +s++k H++t+ OMO54944 134 WVCEKCSKGYAVQSDYKAHLKTC 156 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 439 aa Download sequence
MLANNTCSSV PSSEPFWCIE NGNSNNNKRK RRPAGTPDPD AEVVSLSPKT LLESDRYVCE 60 ICNQGFQRDQ NLQMHRRRHK VPWKLLKRET PVVRKRVFVC PEPSCLHHDP CHALGDLVGI 120 KKHFRRKHSN HKQWVCEKCS KGYAVQSDYK AHLKTCGTRG HSCDCGRVFS RVESFIEHQD 180 ACHMGRIRSE SQALQPAACL SRTASSPSPS SDTNFSTAPW PNLMLSKTKT CTETTILLSP 240 TITKDHNSSP KNAHHHNLDL QLLTTSNPSE ATVSPRKDGH NHSTQLLQLS IGSCDIGEKF 300 EQSTVTCINI NKEPIIKKSA ASHEKPARQQ AREQLRLAMA EKVYAEEARQ QAKRQIELAE 360 QEFANAKRIR QQAQAELDKA QALKDHAIKQ INSTILQITC HACKQQFQAR TPPEENSLVL 420 SYSATTEGEV ERDKSCKGY

Sequence ? help Back to Top

Protein Sequence Length: 439 aa Download sequence

MLANNTCSSV PSSEPFWCIE NGNSNNNKRK RRPAGTPDPD AEVVSLSPKT LLESDRYVCE  60
ICNQGFQRDQ NLQMHRRRHK VPWKLLKRET PVVRKRVFVC PEPSCLHHDP CHALGDLVGI  120
KKHFRRKHSN HKQWVCEKCS KGYAVQSDYK AHLKTCGTRG HSCDCGRVFS RVESFIEHQD  180
ACHMGRIRSE SQALQPAACL SRTASSPSPS SDTNFSTAPW PNLMLSKTKT CTETTILLSP  240
TITKDHNSSP KNAHHHNLDL QLLTTSNPSE ATVSPRKDGH NHSTQLLQLS IGSCDIGEKF  300
EQSTVTCINI NKEPIIKKSA ASHEKPARQQ AREQLRLAMA EKVYAEEARQ QAKRQIELAE  360
QEFANAKRIR QQAQAELDKA QALKDHAIKQ INSTILQITC HACKQQFQAR TPPEENSLVL  420
SYSATTEGEV ERDKSCKGY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	28	33	KRKRRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68130.1	1e-137	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OMO54944