PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO55152

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

G2-like

Protein Properties

Length: 368aa MW: 39583 Da PI: 7.7766

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO55152	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102	3.7e-32	252	305	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ OMO55152 252 PRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 305 9****************************************************7 PP
2	Myb_DNA-binding	47.2	5.2e-15	253	304	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r+rWT ++ ++v+av++lGg+ t+k++ + m k +tl ++ks++q+y+ OMO55152 253 RMRWTSSLHARFVHAVELLGGHeraTPKSVLELMDvKDLTLAHVKSHLQMYR 304 89************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence
MSSLNLIPDL SLHISPPNSA PSSICTGNNE GDSCLDIWRS KDDDSLKSHS DSSVTELSLA 60 NNNLSSSSAF EAESPAAAGL GQQTSFAAAT AAAATTEDDQ TIIRHGIVIA NGSNSSGQQQ 120 HQLSNQNPGI SVLDVTRLKH IKGIPVYNNF PFSSSDNIVE MDPNMLRFYS SPAAAAVLHS 180 GEAYKIANSG GAAASARFNG ISMETLRPQQ FHHYSGAAAM GSNSDLCNGY RMNMMRSRFL 240 PKLQSKRNMR APRMRWTSSL HARFVHAVEL LGGHERATPK SVLELMDVKD LTLAHVKSHL 300 QMYRTVKSTD KPAASSGPIL LSLKSTYGSG EEDYLPARNT INQNGSPNSS IQNENGFPSS 360 NLWSNSSR

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence

MSSLNLIPDL SLHISPPNSA PSSICTGNNE GDSCLDIWRS KDDDSLKSHS DSSVTELSLA  60
NNNLSSSSAF EAESPAAAGL GQQTSFAAAT AAAATTEDDQ TIIRHGIVIA NGSNSSGQQQ  120
HQLSNQNPGI SVLDVTRLKH IKGIPVYNNF PFSSSDNIVE MDPNMLRFYS SPAAAAVLHS  180
GEAYKIANSG GAAASARFNG ISMETLRPQQ FHHYSGAAAM GSNSDLCNGY RMNMMRSRFL  240
PKLQSKRNMR APRMRWTSSL HARFVHAVEL LGGHERATPK SVLELMDVKD LTLAHVKSHL  300
QMYRTVKSTD KPAASSGPIL LSLKSTYGSG EEDYLPARNT INQNGSPNSS IQNENGFPSS  360
NLWSNSSR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16560.1	8e-51	G2-like family protein

Link Out ? help Back to Top
Ensembl	OMO55152