PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO55385

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

bHLH

Protein Properties

Length: 491aa MW: 51512.3 Da PI: 6.7982

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO55385	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.5	6.4e-10	342	386	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h+++Er RR+ri +++ L+el+P++ K + a++L + v+Y+k L OMO55385 342 HSIAERLRRERIAERMKALQELVPSC-----NKTDRAAMLDEIVDYVKFL 386 99*********************8.....6**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 491 aa Download sequence
MDMTSMTLSA SRTPLPSLPF SSSQSNFISN SNTVSLLSKP KSLNKSVFVV GQPRRSTGAV 60 PSRKGLICNS LFGLGVPELV VIAGVAALVF GPKKLPEVGK SIGKTVKSFQ QAAKEFETEL 120 KKPAEESASS EENPTPVIEE KKQDVEVSSS KESEGLSDDF FEQILAVPPG YGGAGGGGGH 180 EMGSATLPMV LQLGTSGGGA AGGSGGDGGG GGGGFRGMGI GVGMGMMPLG LNLEHGFLRH 240 EDGVVVDNNN NNNNNNNASC SAASAVSGIS ERDSMHLTSL FSPFGQMQAQ QIRPSPPPPQ 300 PPNQLHQPFH SQPASGPVAA APHPPAIRPR VRARRGQATD PHSIAERLRR ERIAERMKAL 360 QELVPSCNKT DRAAMLDEIV DYVKFLRLQV KVLSMSRLGA AGAVAQLVAD VPLSVEGDGI 420 EGGSQPAWEK WSNDGTEQQV AKLMEEDIGA AMQFLQSKAL CIMPISLASA IFRTHQPDAP 480 TIVKPETNTP S

Sequence ? help Back to Top

Protein Sequence Length: 491 aa Download sequence

MDMTSMTLSA SRTPLPSLPF SSSQSNFISN SNTVSLLSKP KSLNKSVFVV GQPRRSTGAV  60
PSRKGLICNS LFGLGVPELV VIAGVAALVF GPKKLPEVGK SIGKTVKSFQ QAAKEFETEL  120
KKPAEESASS EENPTPVIEE KKQDVEVSSS KESEGLSDDF FEQILAVPPG YGGAGGGGGH  180
EMGSATLPMV LQLGTSGGGA AGGSGGDGGG GGGGFRGMGI GVGMGMMPLG LNLEHGFLRH  240
EDGVVVDNNN NNNNNNNASC SAASAVSGIS ERDSMHLTSL FSPFGQMQAQ QIRPSPPPPQ  300
PPNQLHQPFH SQPASGPVAA APHPPAIRPR VRARRGQATD PHSIAERLRR ERIAERMKAL  360
QELVPSCNKT DRAAMLDEIV DYVKFLRLQV KVLSMSRLGA AGAVAQLVAD VPLSVEGDGI  420
EGGSQPAWEK WSNDGTEQQV AKLMEEDIGA AMQFLQSKAL CIMPISLASA IFRTHQPDAP  480
TIVKPETNTP S

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	347	352	RLRRER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02590.3	1e-59	bHLH family protein

Link Out ? help Back to Top
Ensembl	OMO55385