PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO55414

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

CPP

Protein Properties

Length: 656aa MW: 72105.1 Da PI: 5.939

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO55414	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	48.8	1.4e-15	370	408	2	40
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 +k+CnCk+skClk+YC+Cfaag +C e C+C+dC+Nk OMO55414 370 ACKRCNCKRSKCLKLYCDCFAAGLYCIEPCSCQDCFNKP 408 589**********************************96 PP
2	TCR	52.9	7.3e-17	455	494	1	40
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+gCnCkks+ClkkYCeCf+ g+ Cs++C+Ce+CkN+ OMO55414 455 RHKRGCNCKKSSCLKKYCECFQGGVGCSSNCRCEGCKNSF 494 589***********************************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 656 aa Download sequence
MDTPDKTQIT PSSSLSKFEI GCHRESRFSV KRHHFLAPSN SRVLQSGNDS NTDEGASEAV 60 QPSDVYDDQV KCDNNGSSSR GISSDLLDEQ SNLAIELPRT LKYDFGSPDC SMVPRDEILK 120 NTSVEVAGEE GSSLQCNKDQ WEERQQSFEN ERDLRKIRRI FPSEESAGCE WVAVVSDVAD 180 LLTLNSSIIY DSTEGQDQRN ADPGTTSFAS AILQPQDDSS NLGNAETGDS SGSCKQSELA 240 DPITDQTPAI LSTCLVDKLV VSDSGLKKDD KEEKCKQSSR QRSIRRRCLV FEKAPGFGLH 300 LNSLANTSKG QNHLSKVTPS PMKSGEVPHD NKVMVTESSP QTPAAVGGNE ADQNSPEKKR 360 HFENIDESTA CKRCNCKRSK CLKLYCDCFA AGLYCIEPCS CQDCFNKPIH ENVVLETRRQ 420 IESRNPLAFA PKVIRSMDDV SDSRGETNKT PASARHKRGC NCKKSSCLKK YCECFQGGVG 480 CSSNCRCEGC KNSFGRKDGE SFSDESEFDA EALETSEMKA PENSALAVVV SKGEEYQDLS 540 APSTNTSRLP FAYSGKLLKS FPHFVRSSPQ VCTTQELDSS DLSSCRPKFE SDLQAIPENE 600 TPKVLKHNCP PLALKPTSPN CKRVSPPHHD CSSSTTWHTR KLILRSVPSF PSFSPP

Sequence ? help Back to Top

Protein Sequence Length: 656 aa Download sequence

MDTPDKTQIT PSSSLSKFEI GCHRESRFSV KRHHFLAPSN SRVLQSGNDS NTDEGASEAV  60
QPSDVYDDQV KCDNNGSSSR GISSDLLDEQ SNLAIELPRT LKYDFGSPDC SMVPRDEILK  120
NTSVEVAGEE GSSLQCNKDQ WEERQQSFEN ERDLRKIRRI FPSEESAGCE WVAVVSDVAD  180
LLTLNSSIIY DSTEGQDQRN ADPGTTSFAS AILQPQDDSS NLGNAETGDS SGSCKQSELA  240
DPITDQTPAI LSTCLVDKLV VSDSGLKKDD KEEKCKQSSR QRSIRRRCLV FEKAPGFGLH  300
LNSLANTSKG QNHLSKVTPS PMKSGEVPHD NKVMVTESSP QTPAAVGGNE ADQNSPEKKR  360
HFENIDESTA CKRCNCKRSK CLKLYCDCFA AGLYCIEPCS CQDCFNKPIH ENVVLETRRQ  420
IESRNPLAFA PKVIRSMDDV SDSRGETNKT PASARHKRGC NCKKSSCLKK YCECFQGGVG  480
CSSNCRCEGC KNSFGRKDGE SFSDESEFDA EALETSEMKA PENSALAVVV SKGEEYQDLS  540
APSTNTSRLP FAYSGKLLKS FPHFVRSSPQ VCTTQELDSS DLSSCRPKFE SDLQAIPENE  600
TPKVLKHNCP PLALKPTSPN CKRVSPPHHD CSSSTTWHTR KLILRSVPSF PSFSPP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22780.1	1e-83	CPP family protein

Link Out ? help Back to Top
Ensembl	OMO55414