PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO55511
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family MYB_related
Protein Properties Length: 127aa    MW: 14872.2 Da    PI: 10.7483
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO55511genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.32.3e-152772148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg +  +E +l+++++k+lG++ W++Ia +++ gRt++++k++w+++l
         OMO55511 27 RGDFEDDEVDLIIRLHKLLGNR-WSLIAGRIP-GRTANDVKNYWNTHL 72
                     788999****************.*********.************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    
MALMCLNRCR KSCRLRWLNY LKPNIKRGDF EDDEVDLIIR LHKLLGNRWS LIAGRIPGRT  60
ANDVKNYWNT HLLKKYNPSS STKDYSKPKN AHHDQIPFNP KDNNHNVTIN SNNIVIKPLP  120
RTLPKKT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.14e-40MYB family protein