PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO55575
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family C2H2
Protein Properties Length: 192aa    MW: 21809.8 Da    PI: 8.5851
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO55575genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.00184101320
               ETTTTEEESSHHHHHHHH CS
   zf-C2H2   3 CpdCgksFsrksnLkrHi 20 
               C++C ++F++   Lk+H+
  OMO55575  84 CNYCQRHFTSINRLKHHL 101
               *****************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    
MTPKASGYGF DTVFAVGLLG YMADQMVSFC YLAGYRTQRN GRQAQNHFQL ISTHPLFIPH  60
RSDMTDEKRD PTWEFGTGVG NGNCNYCQRH FTSINRLKHH LAGFRQNAHP CQQCPRAVAL  120
KCIELLIEFF SEEEQCHRKK RLELLPQRGS ATGFGDGLYV HRPLLCRPLH LNPTSSDHAP  180
HQFLPITVVN QG