PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO55689

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

WOX

Protein Properties

Length: 216aa MW: 24330.1 Da PI: 6.0297

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO55689	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.6	3.3e-21	60	120	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + + +ps++++++++++l +++e++V++WFqNrRa+ k+ OMO55689 60 RQRWTPTPVQLQILERIFDQgTGTPSKQKIKDITSELsqhgQISETNVYNWFQNRRARSKR 120 89***************99************************************97 PP
2	Wus_type_Homeobox	104	9.7e-34	59	122	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPtp Q++iLe+++++G+ tP+k++i++it+eL+++G+i+++NV++WFQNr+aR+++kq OMO55689 59 ARQRWTPTPVQLQILERIFDQGTGTPSKQKIKDITSELSQHGQISETNVYNWFQNRRARSKRKQ 122 789***********************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence
MTDEQLETLR KQIAVYASIC EQLVEMHKNL TAHQDLAGGR LGNLYCDPLM TSAGHKITAR 60 QRWTPTPVQL QILERIFDQG TGTPSKQKIK DITSELSQHG QISETNVYNW FQNRRARSKR 120 KQLVASSNNA ESEVETEVES PNEKKTNPEN LLSHHNPAPR AEDLCFQNPE ITSELHFLSV 180 LSNPPTYHGD DHLSGKMGVP GNYGIYEQAE DYNMAG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	114	122	RRARSKRKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	1e-105	WOX family protein

Link Out ? help Back to Top
Ensembl	OMO55689