PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO55963
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family NF-YB
Protein Properties Length: 224aa    MW: 24514.2 Da    PI: 8.4718
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO55963genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB181.28.8e-5727122297
     NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 
               +eqdrflPianvsrimkk lPanakisk+aketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfe+yv plkvyl+kyre+egek
  OMO55963  27 KEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKVYLNKYRETEGEK 122
               89********************************************************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    
MTGKRNQSSS SPIGSPSSGN ISDSCSKEQD RFLPIANVSR IMKKSLPANA KISKEAKETV  60
QECVSEFISF ITGEASDKCQ REKRKTINGD DLLWAMTTLG FENYVGPLKV YLNKYRETEG  120
EKNSMARQED QAPSTPAAVN EFNKVVNMNN NIAVKGITDH NNFQGYGSGF FSLGAQVTAH  180
HQVQSYGDNH GGMSFNTSRI RENGDGSRTM AAAAAAAHLH RVDW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.13e-64NF-YB family protein