PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO55995

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

MIKC_MADS

Protein Properties

Length: 174aa MW: 20105 Da PI: 9.8079

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO55995	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	89.5	1.8e-28	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtfskRrng++KKA+ELS+LCd+++a+i+fs++g+l +s OMO55995 9 KRIENNTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLSHFS 58 79********************************************9997 PP
2	K-box	26	3.9e-10	108	174	3	69
K-box 3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK 69 +ss++s++++++e+ q+e++ L+ +++ ++++R + e L s+ e+++ e++Le++l+++ ++K OMO55995 108 SSSTNSNTNSNMEEIQREISSLQHQLQLAEEQLRMYEPEPLAFTSMAEIESCEKNLEQALTRVTQRK 174 4677779********************************************************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 174 aa Download sequence
MGRVKLQIKR IENNTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SGRLSHFSGK 60 RRIEDVLSRY INMPDQDRGT LVRNKEFLLS TLKKIKTEND IALQLATSSS TNSNTNSNME 120 EIQREISSLQ HQLQLAEEQL RMYEPEPLAF TSMAEIESCE KNLEQALTRV TQRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77980.1	8e-66	MIKC_MADS family protein

Link Out ? help Back to Top
Ensembl	OMO55995