PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO56027
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ERF
Protein Properties Length: 371aa    MW: 41283.4 Da    PI: 5.6719
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO56027genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.45.4e-21164214256
       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+ge
  OMO56027 164 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYKLRGE 214
               59******9.**********965...5**************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    
MYNSSSSSVF TDPFREELMK ALEPFMKSAS SSSSSSSSPS SPTSSFSSSP TSSFSSYPNL  60
YPEFCSPSST QLFSNHGFSS NYNNLMGFEQ LPGSIGLNQL TPSQILQIQA QIYQQQQQQQ  120
QEHQLLASMS ARTPVQNQKL NFLSPKAVPM KHVSTSSPPK PTKLYRGVRQ RHWGKWVAEI  180
RLPKNRTRLW LGTFDTAEEA ALAYDKAAYK LRGEFARLNF PHLKHQGANI SGEFGDYKPL  240
HSSVDAKLQA ICQNLQKQGN SGKAYSVSNS KTNISAPNSQ PKVEFDNEYY PVKSEEFDQF  300
SDPKVENSLS TSSSSSPDLS DESLAGSSSP ESDISFLDFS DSKWEDNENF GLEKFPSVEI  360
DWEAIRELSE S
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.12e-62ERF family protein