PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO56124
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family C2H2
Protein Properties Length: 358aa    MW: 40557.7 Da    PI: 6.3429
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO56124genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.92.2e-07147168223
               EETTTTEEESSHHHHHHHHHHT CS
   zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                C++Cgk F+r  nL+ H+r H
  OMO56124 147 FCEICGKGFKRDANLRMHMRAH 168
               6*******************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    
MSDPGEPFRI PPEYPIGGGP SLRQQDPIGV TDPRLPLQNL STVKTRMDSL QNFLSQSVNS  60
NTLISKDQMD LVSSEIASAI HQIIVNGAAL LSCAQTAHYP NPTPSLTPNP TPTPAPEPKP  120
EFEEYDEGVS DIIELDAVEL LAEHLHFCEI CGKGFKRDAN LRMHMRAHGN QYKTPEALKK  180
TENKWEWELK NSDRKFRFSC PYDGCNRNKK HNKFRPLKSV ICVRNHFKRS HCPKMYSCNR  240
CHKKNFSVLA DLKSHLKHCG GGEETKKWKC SCGNSFSRKD KLFGHVSLFE GHMPAVMEEE  300
EDQKMKGVVA MEEDEDNEDE MMNRDDGCLE DGVFDGLLDG FGSFDNYYFQ DVLGSSHR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.32e-70C2H2 family protein