PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO56174

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

bHLH

Protein Properties

Length: 328aa MW: 36809.4 Da PI: 6.8842

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO56174	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41.6	2.2e-13	124	175	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+++P++ + ++ + a+i A++++k+L+ OMO56174 124 QRMTHIAVERNRRRQMNDYLAVLRSMMPPS---YVQRGDQASIIGGAINFVKELE 175 79**************************...9****************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence
MALEAVVFQQ DPFTYGCKDF YGCSSFDFGF QLQQGEAKEE TLSKSRSFGF SAISNWGSSS 60 SSPSLMVQQQ QQQPLWNSSS PDHNDFPTGD QFSPADPPPG PPPSYRRKRR RTKTVKNKEE 120 IENQRMTHIA VERNRRRQMN DYLAVLRSMM PPSYVQRGDQ ASIIGGAINF VKELEQLLQS 180 LEAKKRMEKK SSNDDINFSK LFSDFFTFPQ YSTSSTSTHH SAATTAAAAE KRSSPFVADV 240 EVTMVESHAN LKILSKQHPK QLLKLVTGLY SLGLYVLHLN VTSVENMVLY SLSVKVEENC 300 ELSTVNEIAS AVYEMVDRLQ EEAAATSL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	107	111	RKRRR
2	107	112	RKRRRT
3	125	136	RMTHIAVERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	4e-80	bHLH family protein

Link Out ? help Back to Top
Ensembl	OMO56174