PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO56240
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ZF-HD
Protein Properties Length: 250aa    MW: 27896.1 Da    PI: 7.6661
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO56240genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer101.46e-3249103358
  ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                  k rY+eClkNhA+ lGghavDGCgEfm++ g++gt +alkCaAC+CHRnFHR+e+e
     OMO56240  49 KPRYRECLKNHAVGLGGHAVDGCGEFMAA-GADGTLDALKCAACNCHRNFHRKESE 103
                  779*************************9.999********************976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    
MEFEDQEEQD EEMGLAPSYD SLGNPSRVKM SGVEPGSITP TGQQQQQRKP RYRECLKNHA  60
VGLGGHAVDG CGEFMAAGAD GTLDALKCAA CNCHRNFHRK ESELGSPNSV PTTDLYFHHH  120
HQPPQFAPYF RAPAGYLHVA GQQRPLALPS TSGGGGGHSR EDQEDVSNQG SSRKRFRTKF  180
TQEQKEKMLA LAERLGWRIQ KHDEAAVQQF CNETGVKRHV LKVWMHNNKH TLDMAALKQS  240
GNMQMQFKEA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.14e-71ZF-HD family protein