PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO56264
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family bHLH
Protein Properties Length: 221aa    MW: 24848.1 Da    PI: 10.9197
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO56264genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.11.8e-095898449
              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHH CS
       HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAve 49
              +h+++Er RR+ri + ++ Lr++lP++      K++Ka++L ++++
  OMO56264 58 KHKIAERHRRKRISQQYDMLRSILPNL-----IKMDKASVLGETIK 98
              69************************9.....69*******99986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    
MVHLKQIEQV LQPLGGYYSS ASCSRPNSLP QQIFPSLFKS FPRKTKSKAE SSIANAYKHK  60
IAERHRRKRI SQQYDMLRSI LPNLIKMDKA SVLGETIKQA RELKKRVKEM KAVRRGSAER  120
AALPGELDNL SLGYCESDKS LVKVTFSCDD QTELISDITN AVKTVKGSIV RAEMVFIGGR  180
QRSVLWVKGL TGNEGLGMLK RALKMAIDRP KIKNGKSRFP Q
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
166108RRKRISQQYDMLRSILPNLIKMDKASVLGETIKQARELKKRVK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38070.11e-38bHLH family protein