PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO56366
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family M-type_MADS
Protein Properties Length: 193aa    MW: 21804.8 Da    PI: 10.3728
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO56366genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF28.81.6e-092160948
              HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
    SRF-TF  9 rqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
              rq  +skRr   + KA+EL  LC+++  +++f ++g+l +
  OMO56366 21 RQSAWSKRRSSFFYKASELYALCAVQNVLLVFVPSGNLVT 60
              8999********************************9976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    
MAGLPRKGYR NPRGNQQAGA RQSAWSKRRS SFFYKASELY ALCAVQNVLL VFVPSGNLVT  60
NRLVYCGKAD VDQVRRARAE KEASLRKLSE EYAILQQQME ALELRSRRLH QRMMENGCQG  120
RSLMGRPIDE LCIEEIPTVR PTLQEYAEAL RKHTQKQKRL SKQAASMLAG PNDASLSKSN  180
EGDSSGGFND RER
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.12e-08M-type_MADS family protein