PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO56426

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

bZIP

Protein Properties

Length: 190aa MW: 22047.8 Da PI: 10.1585

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO56426	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.9	6.9e-11	81	124	5	48
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 ++ rr+++NRe+ArrsR RK++ +e+L++ v L eN++L ++ OMO56426 81 RKRRRMISNRESARRSRMRKQKHLENLRNQVNRLRVENRELNNR 124 5789**********************************999865 PP

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence
MSTVPAIFPS EPMLGNDPFP AFETGFTPWD CSELFSTTQS MGPAGSGSGS EEMNQNQNQT 60 NSNSNSGSDE PNQPTSIIDE RKRRRMISNR ESARRSRMRK QKHLENLRNQ VNRLRVENRE 120 LNNRMRFVLY HCHRVRTDND RLRSEYSMLR QKLSDIRQIL LFKQLQQFSS AWPCNNVTVM 180 SEQIPPPLIT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	81	85	RKRRR
2	81	102	RKRRRMISNRESARRSRMRKQK
3	94	101	RRSRMRKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49760.1	1e-38	bZIP family protein

Link Out ? help Back to Top
Ensembl	OMO56426