PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO56464
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family MYB_related
Protein Properties Length: 293aa    MW: 31928.9 Da    PI: 10.6773
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO56464genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.64.5e-11555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT+eE+  l+ +v ++G+g W+ I +          R+  ++k++w++
         OMO56464  5 KQKWTAEEEAALKAGVLKHGTGKWRNILSDPEfssvlRSRSNVDLKDKWRN 55
                     79************************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    
MGAPKQKWTA EEEAALKAGV LKHGTGKWRN ILSDPEFSSV LRSRSNVDLK DKWRNINATA  60
IWGSRQKAKL ALKRNQLNGK HVENSVAVTI VPASEEVVDA KPFTVSSGTP RAISPRKPFS  120
RLDNIILEAI TSLKEPGGSD RASIAVYIEE KYAAPLNLKK LLATKLKLLV ANGTLIKIKH  180
KYRIAPRSTV TEARRSPLPL LEGRLKDSSK PEKKVIRILT RTQVDADLSK MRSLTAEEAA  240
AAAARAVAEA EVAIAEAAQA AREAEAAEAE AEAAKIFAKA AEKALKSRMQ ETW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49850.11e-70MYB_related family protein