PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO56496

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

C2H2

Protein Properties

Length: 242aa MW: 25656.3 Da PI: 7.8387

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO56496	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13	0.0003	82	104	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k F++ L H +H OMO56496 82 YRCTVCNKAFPSYQALGGHKASH 104 9***********99999998887 PP

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence
MALETLNSPT SAPPLLHHDD IDLHSIEPWT KRKRTKRPRI ENPPTEEEYL ALCLLMLAQG 60 NAAAATRPTP SAAPPKNSLH SYRCTVCNKA FPSYQALGGH KASHRKLGGG ADEQPNATAT 120 TAATVATNSP PLNQGGKAHT CSICYKTFSS GQALGGHKRC HYEAATGSGG STNINNSNNS 180 GGDGVKSSSQ SQRDFDLNLP AEEEAISIDV DRRDGFSAGT TDDEEVVSPS PPAKRGSCHV 240 RR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67450.1	2e-41	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OMO56496