PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO56588
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family MYB_related
Protein Properties Length: 211aa    MW: 22684.2 Da    PI: 4.867
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO56588genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.34.2e-14540137
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtl 37
                     +g+W++eEd+ll ++v+++G+++W++I++ ++ gR++
         OMO56588  5 KGPWSPEEDDLLQQLVQKHGPRNWSLISKSIP-GRSE 40
                     79******************************.**95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    
MDRIKGPWSP EEDDLLQQLV QKHGPRNWSL ISKSIPGRSE CNFISNGGYD GNLGGDERPP  60
LKRSVSAGLY MSPGSPSGSD VSDSSVPVSS SHVYKPIART GGVNVDVNVM PAGLEATSSS  120
NDPPTSLSLS LPGVESCEVS THPTVTTEST QTRNEGKNEE RGSGVMGFSA EFMAVMQEMI  180
RVEVRNYMMQ MQQQNGSVGG VRNGDMFGWR V
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.11e-30MYB family protein