PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO56614
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family WRKY
Protein Properties Length: 371aa    MW: 40578.3 Da    PI: 9.993
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO56614genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.69.2e-32300357359
               -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
      WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
               D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYegeHnh+
  OMO56614 300 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPSMLIVTYEGEHNHS 357
               99************************988****************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    
MAVELMMSYR NNNNSFTSKM EENAVQEAAS GLESVEKLIR LLSQTQQQQQ QQNQSFNNNQ  60
EKYQSSTTPS SNKSSLDLEM DCKAAADVAV SKFKRVISLL GRTRTGHARF RRAPVGVTPP  120
FAAATNSNST STVSPPVSQN QANQELETKV YYATPIQQIP PPVSYHPPPP AHHHHHHHDF  180
LSVKSGGLER KDSSTTINFS YSSAGGNSFM SSLTGDTDSK QPSSSSAFQI TNLSQVSSAG  240
KPPLSSSSFK RKCSSETLAS GKCSGSSAGR CHCSKKRKLR SKRVVRVPAI SLKMADIPPD  300
DYSWRKYGQK PIKGSPHPRG YYKCSSVRGC PARKHVERAL DDPSMLIVTY EGEHNHSLSV  360
AETSNLILES S
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.12e-71WRKY family protein