PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO56690

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

Protein Properties

Length: 505aa MW: 56370.8 Da PI: 8.311

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO56690	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	59.7	4.9e-19	124	209	1	92
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f k l++s+v++ ++ lp +f++ h +++++++ lede+g+++ vk+ +k++ l++GW++F+ a+ L egD +vF+l+++++f+l OMO56690 124 FAKSLVRSHVGSCFWMGLPGPFCKVHL--PRKDTMVNLEDENGQQFYVKYYADKTG----LSAGWRQFCTAHSLLEGDALVFQLVESTKFKL 209 889******************8885..457789***********334444....**********************98888755 PP

Sequence ? help Back to Top
Protein Sequence Length: 505 aa Download sequence
MDPRVKKEAE DVQQRTTSFY GRRLKPTAED DLTIAQLSHT PKLKPSSSGN QKKGKALTEI 60 KEKQKRSQSE SIIKPAVSDS GGKQTSSSKN KGVGDGKGTP EIKSPALIRA EEVQSNLEPQ 120 FPSFAKSLVR SHVGSCFWMG LPGPFCKVHL PRKDTMVNLE DENGQQFYVK YYADKTGLSA 180 GWRQFCTAHS LLEGDALVFQ LVESTKFKLA GAYRPAAHHL CGTALLFFLH HILHKNNEDR 240 RGGKYIAHDG TLDDAEIGTS GCKSTKRKRP KSLPLAVVQK KNKRPGLQTL ACNLGQPAEQ 300 SENDSEEVGS EVLEGFKLSV PTTQFKDITS FDNFNILVDG MAIDSELSED VRNKYYKLCC 360 SQNSFLHENI VHGMNFKLIV GAISETVNIA DAIRACKLTT PRDEFDSWDK TLKAFELLGM 420 NVGFLRNRLR RLVNLAFESE GAADTRRYIE AKTERAQTEN EIRNLEAKLA ELKDASKTFG 480 VEIESLQSKA ETYELRFEEE VTAPW

Sequence ? help Back to Top

Protein Sequence Length: 505 aa Download sequence

MDPRVKKEAE DVQQRTTSFY GRRLKPTAED DLTIAQLSHT PKLKPSSSGN QKKGKALTEI  60
KEKQKRSQSE SIIKPAVSDS GGKQTSSSKN KGVGDGKGTP EIKSPALIRA EEVQSNLEPQ  120
FPSFAKSLVR SHVGSCFWMG LPGPFCKVHL PRKDTMVNLE DENGQQFYVK YYADKTGLSA  180
GWRQFCTAHS LLEGDALVFQ LVESTKFKLA GAYRPAAHHL CGTALLFFLH HILHKNNEDR  240
RGGKYIAHDG TLDDAEIGTS GCKSTKRKRP KSLPLAVVQK KNKRPGLQTL ACNLGQPAEQ  300
SENDSEEVGS EVLEGFKLSV PTTQFKDITS FDNFNILVDG MAIDSELSED VRNKYYKLCC  360
SQNSFLHENI VHGMNFKLIV GAISETVNIA DAIRACKLTT PRDEFDSWDK TLKAFELLGM  420
NVGFLRNRLR RLVNLAFESE GAADTRRYIE AKTERAQTEN EIRNLEAKLA ELKDASKTFG  480
VEIESLQSKA ETYELRFEEE VTAPW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	5e-32	B3 family protein

Link Out ? help Back to Top
Ensembl	OMO56690