PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO56700
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family HSF
Protein Properties Length: 291aa    MW: 32046.5 Da    PI: 6.374
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO56700genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind119.71.7e-37101012102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d+ ++++isw+eng+sfvv+++ efak++Lp+ Fkh+nf+SFvRQLn+YgF+kv  ++         weF++++Fk+g+kell++i+
      OMO56700  10 FLTKTYQLVDDPVTDDVISWNENGTSFVVWKTAEFAKDLLPNCFKHNNFSSFVRQLNTYGFRKVVPDK---------WEFANENFKRGQKELLSEIR 97 
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k+
      OMO56700  98 RRKT 101
                   *986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    
MAQRSVPAPF LTKTYQLVDD PVTDDVISWN ENGTSFVVWK TAEFAKDLLP NCFKHNNFSS  60
FVRQLNTYGF RKVVPDKWEF ANENFKRGQK ELLSEIRRRK TVTSSPANGS ANGKSTAGAG  120
PSSPTNSGED LGSTSTSSPD SKNPGSVETT TPAVVTQFSD LSDENEKLKR DNEMLSSELA  180
QAKKQCDELV AFLTDCVKVG PDQINRIMRQ GSCGSTRDRS HGVDNQDDDD DDEKGGEEGN  240
GSLKLFGVWL KGAERKRARE EKIVYGGPHA KEMKTVDFGH VHLMKSGKVC N
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.12e-98HSF family protein