PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO56859

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

HD-ZIP

Protein Properties

Length: 203aa MW: 23510.7 Da PI: 7.5696

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO56859	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61	1.9e-19	49	103	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 k++++++eq++ Le F +++++ e++ +LA++lgL+ rqV vWFqNrRa++k+ OMO56859 49 KKRKLSQEQVNLLELNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKN 103 45699************************************************95 PP
2	HD-ZIP_I/II	119.1	2.3e-38	49	139	2	92
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 kkr+ls+eqv+lLE +F +e+kLe+erK +la+eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+a+d + +++rLe+ev +L+e+l OMO56859 49 KKRKLSQEQVNLLELNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSKLKSAHDGAVLDKCRLESEVLKLKEQLC 139 9***************************************************************************************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence
MKELEDHMAL ISQMYPGVYT QMATQQGESK PRRRRKKNKG GENSLAGAKK RKLSQEQVNL 60 LELNFGNEHK LESERKDRLA SELGLDPRQV AVWFQNRRAR WKNKKLEEEY SKLKSAHDGA 120 VLDKCRLESE VLKLKEQLCE AEKEIQRLTE RVDGVSSNSP ISSSLSMEAM QEPPFLGEFG 180 VEDAFYIPEN SYIHGMEWMN LYM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	32	51	RRRRKKNKGGENSLAGAKKR
2	32	52	RRRRKKNKGGENSLAGAKKRK
3	33	52	RRRRKKNKGGENSLAGAKKR
4	33	53	RRRRKKNKGGENSLAGAKKRK
5	34	54	RRRRKKNKGGENSLAGAKKRK
6	35	55	RRRRKKNKGGENSLAGAKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	3e-66	HD-ZIP family protein

Link Out ? help Back to Top
Ensembl	OMO56859