PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO56900
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family MYB_related
Protein Properties Length: 95aa    MW: 11160.4 Da    PI: 8.8993
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO56900genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.43.3e-081457344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +WT+e  +l+ +a   + ++   +W++Ia+ +g g  ++++k  +
         OMO56900 14 NWTAEQNKLFENALVTYDKDipdRWRRIAKLVG-GTNEEEVKRQY 57
                     8********************************.*9****99877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    
MESTQHFSQS YNSNWTAEQN KLFENALVTY DKDIPDRWRR IAKLVGGTNE EEVKRQYEIL  60
LEDIKRIESG KVPLPKYRRT AGSSKTNDIA NEQQR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.15e-30MYB_related family protein