PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO56910
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family GATA
Protein Properties Length: 253aa    MW: 28339.1 Da    PI: 8.1842
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO56910genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.52.4e-20139173135
      GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
               C+nC tt+TplWR+gp+g+k+LCnaCG++++k+++
  OMO56910 139 CANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 173
               ********************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    
MMHRCSSSQG NMVGPCSCGL FHHSQSNSFS MLFSMPNHHK SFDETDMYPY TSSSSSVDCT  60
LSLGTPSTRL CEDVDDRRSR HHDRRSGTSA CMSNFCWDLL QNNKNTTTPN NYSQQSSKSR  120
SNGNGGNSSG NDPLLARRCA NCDTTSTPLW RNGPRGPKSL CNACGIRFKK EERRATAANA  180
SNSGAMLEQQ HHGYGHHNNS WVHQSQKMPC YSQVNEFRFI DDSDRDPDTG IPFLSWRLNV  240
TDRPASLVHD FTR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50870.17e-64GATA family protein