PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO56918
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family MYB_related
Protein Properties Length: 78aa    MW: 8835.87 Da    PI: 9.3987
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO56918genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.91.3e-091053344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +WT+   +l+ +a +++  +   +W+ Ia+ +g g++++++k+ +
         OMO56918 10 SWTPKQNKLFEKALAKYDRDtpdRWHNIAKAVG-GKSAEEVKLQY 53
                     7*****************99*************.********987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 78 aa     Download sequence    
MASNSLTSSS WTPKQNKLFE KALAKYDRDT PDRWHNIAKA VGGKSAEEVK LQYEILVRDL  60
KDIESGRYPY PYPSGSSN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.24e-33MYB_related family protein