PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO56979
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family bHLH
Protein Properties Length: 362aa    MW: 40253.3 Da    PI: 8.7349
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO56979genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH149.1e-052602971254
               HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
       HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
               R +++ ++++ L++++ +      +K + a++L++A+ YI+ L
  OMO56979 260 RKEKLGDRIAALQKMVAPF-----GKTDTASVLTEAIGYIQFL 297
               7778899*********998.....8****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    
MGLKYNRNLT ETMPKSRDSW PPPLIRPSMN QDSFNQQSAS EFLLANMKDE MSDAFPKLSE  60
MLYCHSNAED SYLPSKKHIN PQSTDHHLGA NLWHSNFPMS NHMTDLQLSS GDQFYSNSHH  120
IPYLGTAAAA TSRYHDFNHI FPSTNISKSD FCSTLFSSSL DLNLKALDLL TSTYDHGGNC  180
NQSLLDNPGK LSRSILMSHD QIRERSDSPS TSSKISTLAG GSITSTKRPG SFSETKESIK  240
DAKKHRSSMS RSPCPTLKVR KEKLGDRIAA LQKMVAPFGK TDTASVLTEA IGYIQFLHDQ  300
IQTLSVPFMK STQSKLYRSV QMGIKGEEAG KEEQIRDLKS RGLCLVPQSY ASYYINSCSG  360
GI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.15e-39bHLH family protein