PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO57001
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family MIKC_MADS
Protein Properties Length: 219aa    MW: 25438.1 Da    PI: 9.8138
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO57001genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.96.6e-291059251
              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
              +ien++nrqvt+skRrngi+KKA+EL vLCda+v++i+fs tgkl+ey+s
  OMO57001 10 KIENTTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSGTGKLHEYIS 59
              69**********************************************86 PP
2K-box76.76.2e-2671165198
     K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
               yqk+ g +l+++++e++q++++kLk+ +++L+re++++lGedLe+L++keLq Le ++ ++l  +R   ++++++q+++ +kk k+l+e++ +L   l
  OMO57001  71 YQKTLGIDLWSTHYEKMQEHYRKLKEINNKLRREIKQRLGEDLEDLNIKELQALEAKMASALDAVR---YHVIKTQTDTCKKKVKNLEERHANLVLDL 165
               78899999*********************************************************9...89**********************98665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    
MGRGKIEIRK IENTTNRQVT YSKRRNGIFK KAQELTVLCD AKVSLIMFSG TGKLHEYISP  60
NISTKTFFDL YQKTLGIDLW STHYEKMQEH YRKLKEINNK LRREIKQRLG EDLEDLNIKE  120
LQALEAKMAS ALDAVRYHVI KTQTDTCKKK VKNLEERHAN LVLDLEAKIE DGIVENEGYY  180
ESANGASNLY ALRLHQNHHP SLLHHHAGRF GPHHHLRLA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.18e-69MIKC_MADS family protein