PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO57027

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

DBB

Protein Properties

Length: 236aa MW: 25781.9 Da PI: 7.0561

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO57027	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	22.1	3.2e-07	4	33	5	34
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeH 34 C+ +e+ ++ fC ++ lC+ C ++ H OMO57027 4 LCDSCESAAAIVFCAADEAALCRACDEKVH 33 7**************************998 PP
2	zf-B_box	26	1.9e-08	52	91	2	37
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37 + ++C+ +e+ ++ ++Ce +++ lC +C + H g H OMO57027 52 DVPRCDICENAPAFFYCEIDGSSLCLQCDMIVHVGgkrtH 91 5799**************************9995544455 PP

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence
MRTLCDSCES AAAIVFCAAD EAALCRACDE KVHMCNKLAS RHVRVGLATP SDVPRCDICE 60 NAPAFFYCEI DGSSLCLQCD MIVHVGGKRT HGRYLLFRQR VEFPGDKPGN IEDPASQPAD 120 PSETRRGQNQ SAKPTMGENQ QNHKLSPVQV VDANADGHVK MDTKMIDLNM KPHRTHGQAS 180 NNQPVGPAHT AQASRNKTIH GNGGDYEARS MEGLEFTYVS RSAAVQNYHP LGFSLN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38960.1	5e-78	DBB family protein

Link Out ? help Back to Top
Ensembl	OMO57027