PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO57056
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family WOX
Protein Properties Length: 288aa    MW: 32474.8 Da    PI: 6.9275
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO57056genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.37.2e-202687257
              T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
  Homeobox  2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
              ++R+t+t++q+++L++l+++   r p+ae++++++++l    +++ ++V++WFqN++a+e++
  OMO57056 26 STRWTPTTDQIRILKDLYYNngVRSPTAEQIQKISARLrqygKIEGKNVFYWFQNHKARERQ 87
              58*****************8678*************************************97 PP
2Wus_type_Homeobox113.41.1e-362589265
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       ++tRWtPt++Qi+iL++ly+ +G+r+P++e+iq+i+a+L++yGkie+kNVfyWFQN+kaRerqk+
           OMO57056 25 SSTRWTPTTDQIRILKDLYYnNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNHKARERQKK 89
                       789***************9779*****************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    
MEPQQQHVNE DSSGSGKGSF LCRQSSTRWT PTTDQIRILK DLYYNNGVRS PTAEQIQKIS  60
ARLRQYGKIE GKNVFYWFQN HKARERQKKR FTTTTTTDVP MQRPTTVSNN APSCWKPDDH  120
NSIHNNNKYP NLNPGYSPAS PNCSTGVITS GQMGNYGYGS MTMEKSFRNC SISCGSSTNA  180
SEVPLSHNFG WVGFDPSYAS SYTVFEKKKF IDGSIILEEE DEEEDQETVA PHIQTLPLFP  240
MRDMKPEPDS CYSGWYRTSD HHDGYVSARA SLELSLNSCT GNYSQGSF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.13e-52WOX family protein